NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224557_1000010

Scaffold Ga0224557_1000010


Overview

Basic Information
Taxon OID3300023101 Open in IMG/M
Scaffold IDGa0224557_1000010 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)278366
Total Scaffold Genes239 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)154 (64.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009619Metagenome / Metatranscriptome315Y
F055952Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0224557_1000010101F009619N/AMREFSILTNRKRAVVALVHSIIFLLIAFRQMIAATPAAGIWVPATVPTGAWILCGIFTVASAILLWLFAISRGWTEKLYFGMCTVSASSGLLRTTFGDHTFHAGLYIRFVMLISAVLVGLFIVRIHSAAPPIPETPDPVL
Ga0224557_100001026F055952AGGAMRGSFLSFSYPSSIMLVGLLVLSTRFLWAQRTLPLENIPIQVLETPAPFARVSEVQTPLHLTYRRLPLTFERNQGQTDSRMKFFPHYPGYYRPPITTNAALYPATRTAESWRKLWGKENYLIVRAPSRWRTFALAYGKIPRETTCCFGDLEHYGHRIPWAGSTILRVLQQAKAHPHVTRVLTVLEPQF
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