Scaffold Ga0255782

Basic Information
Taxon OID	3300023105 Open in IMG/M
Scaffold ID	Ga0255782_10071784 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023105 Open in IMG/M

Scaffold ID

Ga0255782_10071784 Open in IMG/M

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	1882
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

1882

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020186	Metagenome / Metatranscriptome	225	N
F036125	Metagenome / Metatranscriptome	170	Y
F048697	Metagenome / Metatranscriptome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255782_100717841	F020186	N/A	NPNRPQRGKRSVKLTGEASPQEIPLSAGTVTLIANGSGTTFTLANGQEGQMMTFVASSDGAGNINDIRVNCRARYALDSGGVRITGSSSTAEWAPFNATQEHSMAWAVFTDGEWCWSQGTNEE
Ga0255782_100717842	F048697	AGGA	MADFQDLRGQRNLFGDRRSPFNGWVYESAQYKMFVCDPDSTPDSRAKFDSVGHRMMYAINPNWMVVRSYTGQVMMLVDGNRWDAGSIKQTMDEQVYQVTAEDTVWTVTESSGAWFDNYDNVSHGDENGNVIIDTTLSYWRTANTYNNAQIWEQPPGATHPELRPTIQFDITNANPNTFLGFLNSEELEIWNTWQSWPHGEWNLGNYFDGTDRYNEFPLDVGISFNNVQVFEVVVDAMNDWITDNYGTDASEENDMDEASDSQLWRAESPLSSMLSAINPICWTFLLKDRALTVDQKTANIVFMTDNATSMEDFWQKMESSIKKSDNNGPDPKLVINPYWGVKPS
Ga0255782_100717843	F036125	AGGA	MAANGISTLANKQLRQVAKLDLAQAKRKGRVITEGGGTWSDNGVDDPTANYARANSMYDLTALPTNYNVNAVNDIANPDGLLKKRPWVTAQVIAEPETLTEAIVGGGGDLVDLQIWYDAADKTTVIPNATDESQITQWTDKSNFAHNANPD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0255782_10071784

Overview

Ecosystem & Geography

Associated Families

Sequences