Basic Information | |
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Taxon OID | 3300023109 Open in IMG/M |
Scaffold ID | Ga0233432_10001252 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 24682 |
Total Scaffold Genes | 40 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (70.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: British Columbia | |||||||
Coordinates | Lat. (o) | 48.5847 | Long. (o) | -123.5008 | Alt. (m) | Depth (m) | 10 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007024 | Metagenome / Metatranscriptome | 359 | Y |
F009597 | Metagenome / Metatranscriptome | 315 | Y |
F026722 | Metagenome / Metatranscriptome | 197 | Y |
F028319 | Metagenome / Metatranscriptome | 192 | Y |
F053571 | Metagenome / Metatranscriptome | 141 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0233432_1000125222 | F026722 | N/A | MRNQGKGNFDYESFKAMYDADPRLQQLVTNFDKDKIEFKQSEVDDVAGAVPGNPGRPSDTVGNMAKNATDVGDKL |
Ga0233432_1000125238 | F053571 | GAG | MNPTPRQPDEESKRLMDEYLAKGGKVTTCEPFARTENLEVKGGFYGRKPKKKEE |
Ga0233432_1000125239 | F007024 | N/A | MNVQQGDKAVIVFSINPSNVGRFVYVAEYIGKFQAGEQFEAYGMTSECAVTDHYWWIEAEDLNIQLGPSPKAYIADSWLRKLVDPNKKVTTKVSKELDMFN |
Ga0233432_100012524 | F028319 | N/A | MMTPIEIAEYKQRWMSKEETYSVRLHSDLHIDGKYWCRKHLERHQWSMNTWTNVYEHTFYFEDNTQAKRFEQQWPKYTNQ |
Ga0233432_100012525 | F009597 | AGGA | MYAVMVCLDGKDDWIYITKQTEHCWDLQPELFEDAHEAMEFAKTFQLPDKPENVMVVDYYEN |
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