Scaffold Ga0233432

Overview

Basic Information
Taxon OID	3300023109 Open in IMG/M
Scaffold ID	Ga0233432_10001252 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Restricted
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components
Scaffold Length (bps)	24682
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (70.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location Name	Canada: British Columbia
Coordinates	Lat. (^o)	48.5847	Long. (^o)	-123.5008	Alt. (m)	Depth (m)	10
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F007024	Metagenome / Metatranscriptome	359	Y
F009597	Metagenome / Metatranscriptome	315	Y
F026722	Metagenome / Metatranscriptome	197	Y
F028319	Metagenome / Metatranscriptome	192	Y
F053571	Metagenome / Metatranscriptome	141	Y

Family

Category

Number of Sequences

3D Structure?

F007024