NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255751_10097343

Scaffold Ga0255751_10097343


Overview

Basic Information
Taxon OID3300023116 Open in IMG/M
Scaffold IDGa0255751_10097343 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1841
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076013Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0255751_100973432F076013GGAMEGIFAIAVGLIMCESDAPGRKLDVSSVNRIRSQVKSSMYTRGGFTKVLFRGKQFRIKTKGSQPDYVPDFVTVTLQVSLKEGEVASAFGKKFFDNTKESVIQTLIKQVVTSATKYKKDLRAAQDQYLLNNKPEKVDVVVVADGVGGEQSGGDLKGDVAVNITINGTPIINRDLNFSLKAGKTPSKTISNESPYKSMMRVSETFELGIDPKKYEFLAGSSRTPKEKFEKVKYTTMFYNEVLDGLVDSFNVATGSPKAWDFLKKAAFGDDYAAVVSIGTAKTNESSIEYINALQRRYPTIATKKVGNNIKFFVSEINAPLFQIRFKNRSKITGDGEASISELKMMIETEKIFKQPRDWDPSVGNIGV
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