NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255751_10187819

Scaffold Ga0255751_10187819


Overview

Basic Information
Taxon OID3300023116 Open in IMG/M
Scaffold IDGa0255751_10187819 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1170
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037237Metagenome / Metatranscriptome168Y
F062791Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0255751_101878191F062791N/AVFVRDIDQDDYARVAKAIYMEMGIDFGPPQYHLHIDEIATP
Ga0255751_101878193F037237AGGAGGMSTTIGDLVDRTFREYLEPMDDIVSYTTLSNSDSISDSKVGLTSTGTSVTFNGDLLSVEEEDALDAGAIIEIGQELLICTDLNAVTNTITVTRGARGTTAAEHEQGSLIKITPPFPRKNVFDAVCDQIKNMYPTLFAVETKSVVSSTGYTLLSGDYDNYLIAPIKAISQYTDWDGNSDETGTIYRGVTVEMVDLPNPFTYVDADGVSQ
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