NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255751_10320915

Scaffold Ga0255751_10320915


Overview

Basic Information
Taxon OID3300023116 Open in IMG/M
Scaffold IDGa0255751_10320915 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)799
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F021750Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0255751_103209151F000325N/AGCYAEATENQYKNARTAAFNNVITEKGRIRSMILDAIKRDKSIRWHERGYWVNDGVLDTDYVNNVCAACESVIESGYTLPDMWFYTHIYDSRLSAMNKYMAVYASVHNADDMIAAKLAGFTMFAWCDSDMAIAPKRPRGKIKKAAWQAELPKLVVLHGEQFITCPEIRKGRDFVTCTGNKTSRACNMCPTGKKNVLFPCH
Ga0255751_103209152F021750GAGGMQINSYRYVTLEDFVDTHELDLMDVDDILMHSKYSYGTNDDTFVGYETLCDMCNTRPLSTYR
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