NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255762_10137608

Scaffold Ga0255762_10137608


Overview

Basic Information
Taxon OID3300023119 Open in IMG/M
Scaffold IDGa0255762_10137608 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1416
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013173Metagenome / Metatranscriptome273N
F013967Metagenome / Metatranscriptome266Y

Sequences

Protein IDFamilyRBSSequence
Ga0255762_101376081F013173AGGAMAANGISTLSTKQARQVAKLEYAQAKRKGRVITDGGALGTYGTWSDNGVDDPTANYARANSMYDLTALPDLYNGNVPGADDNANPDGLLPKRPWITAQIISEPETLSDAIVGGGGDFTDLQIWYDAADTATIIPNATDESQITQWTDKSNFAHNANPDGGSAKPTYEDTTPLNGYGYIEFDGVDDRLTINPFTQLAGATGWTMFVVAQKTDGAELSGVLTRTDFGDLRI
Ga0255762_101376082F013967N/ATAWIVTDSDGAWTYNALDGVTHGTDGGFPVIDINYSYWRSAIVGSVVYDANTEDELNETITFDITNANPNTFTGSLNSNELAIWNAWNSWPHGEWNLGNYDTGRYNEFPLDVPVSFTNVRMFEVRVDAMNNWITDNYGTDANEENDMDSASDSQLWRAGSPLASVLSAINPICWTFRLKGTEATAVDQKTDSIVFMTDNATSMEDFWQKLESSIKSSSDNNGPDPKLVINPYWGVRPA
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Institute for Fundamental Biomedical Research
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