NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255761_10097693

Scaffold Ga0255761_10097693


Overview

Basic Information
Taxon OID3300023170 Open in IMG/M
Scaffold IDGa0255761_10097693 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1849
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026742Metagenome / Metatranscriptome197N
F062273Metagenome / Metatranscriptome131N
F070202Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0255761_100976931F062273N/AHITKASLRVLTRKLERLRRQNEDIRYLGKYWYGKFKDYFLY
Ga0255761_100976932F070202GAGMAKQYYQGEYGFKTILKRYPTFKSFVNVLKKDKSNLYLETNDGMMNNIPLVKTIADPKEYNRVLEILTKVKSAKFNVKTRDNIVDITMGNLTWRYYRSGGRLQNVFDEKGNAKTASKPKTEQQEDGVRYLLESGKLQSKENINKTIGFNFGEDWHNSFERTFNGISDNIMRPTIMKQYNFYRDSNPRKPKFLNQLTDARILPDSKDNWNPSDIWAVKRSSENKLTSEVNKLFNTVLKTKDIEKLNDFIFKKFQSKEIIGISLKQVTASKATVKKIQTDAKFMDSIRFDGILKKFEFNASNSYFDILFKMKVFKETVEYRFRFRPRGASGQIKTFGEGQPIEQKTFDGAVSSDVVISEFTDVRAFENNVLKLKTKGNVLSTLKTSNLNKDFVDFVIDDKFKFVKVSELQDKLSDYEIKRAVVLLYYIYNFETANNKQRVFKRFYLAAKKMNEFSSIHYKVF
Ga0255761_100976933F026742N/AVIEILIYGLGILEFPYDDNLKNCHANANLIYQQNGVEYFTKIDPPEFWAEGDYWLGEDGKRYRLAGHRCIDKETGKEIGNNRNY
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