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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10000013 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 373949 |
| Total Scaffold Genes | 478 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 358 (74.90%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | (Source: IMG-VR) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002267 | Metagenome / Metatranscriptome | 576 | Y |
| F002869 | Metagenome / Metatranscriptome | 524 | Y |
| F003826 | Metagenome / Metatranscriptome | 466 | Y |
| F005563 | Metagenome / Metatranscriptome | 396 | Y |
| F007163 | Metagenome / Metatranscriptome | 356 | Y |
| F039034 | Metagenome | 164 | Y |
| F041019 | Metagenome / Metatranscriptome | 160 | Y |
| F061653 | Metagenome / Metatranscriptome | 131 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_10000013104 | F061653 | GGAGG | MRYGNMPYKYRVVTEVSSKEDADVDFLGRQVLLTTNNFQTARKECIEWAAYDDILVHVINQFGSSKFSCDGASEAYDRFPKTAEAV |
| Ga0214921_10000013257 | F002267 | GGA | MKLGRFSAIHAPVQRIYKRPAVVAANPTPVLDLDAANYSAVPTTGSTVAGTGAHTITVANAGGSITWQSSNGGVFRKSTSSATDVIYGGPNYVTGQSYTVFMAYKRIATSDGRLLNTQSEASKDWLMGLYNGNDQTFYPNFAVNLPSTGADLFWHLDWATWDTSTGLGQLYSATSVSPSSVTFSATNAGGGGFDQLRLFSRSLGSEVQTADIAFIKVYNDVLTLAQIKALYATYKTRFYP |
| Ga0214921_10000013283 | F039034 | AGGAG | MKERELETKSAGYYAFAASRDARMKATAMWSHYSEAQKVQAERMKLGLELCYSAKGIYVNPRKKFIAIKIDNPTVKDRKNLSLLEGDYEKAGITKVVSDQGVTYRIAKV |
| Ga0214921_10000013397 | F003826 | N/A | MDPITIGLAFAAAQSAVSHIKQAIALGKDINSLAGQFSKFFESSDSIHRERTKLKAKASIQGKTDAELGHEALQIAMHSDALRQAERDLKDMILWQLGKPELWEHMIKERTRLFKERAEAQRAEEERQLAHKKKMADMGMMAMYFLAGSVVVFAFVMVGIGVYGQMEEKRIYEQKVADRNLVLRRQAKERADQQKKELQDYVKN |
| Ga0214921_10000013418 | F007163 | AGGAG | MTLEDLQYIFDRQIEEGTEKLYFMLVDGDRLPVVQRHPSTDLAGLLPMLSSFEYAGSPAGMPRFTK |
| Ga0214921_10000013422 | F005563 | AGGAG | MIDYYEALREMNTGKVVKYVGTVNGNVWSDNGASFCMCRGCIFLYDDGVIKWNKLGYMVYDPDFRYELTGETVDPRAWKPEKNRDRKDIKSKLGYSRVGRNNV |
| Ga0214921_10000013424 | F002869 | GGA | MTNEITVEMLDRKIAWCEQQLADAKAATIHRMQDFYFEKTRASVAEDWPEAFTLQELADTLGVDQVRYRIYYSQDNLTCRLFVFRAHCTKSEEQKMLALGFVLAQDGDTENIPDQPVEEVEE |
| Ga0214921_1000001351 | F041019 | GAG | MIDGIKSATTTLKTAQSAGKELGAVVSSQQADMEDTIQREHQARVKSKLAEQHRASTLELRALEKFESKVKYEQEIAKLKADTIRKHGKDAWTKVEAEKALIEKEHQAELSAMDHDRQKQVDVLCWCFTAGALITYFLKLYKL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |