NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000015

Scaffold Ga0214921_10000015


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000015 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)356312
Total Scaffold Genes464 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)323 (69.61%)
Novel Protein Genes27 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)24 (88.89%)
Associated Families27

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F001008Metagenome / Metatranscriptome807Y
F002267Metagenome / Metatranscriptome576Y
F002869Metagenome / Metatranscriptome524Y
F002977Metagenome / Metatranscriptome516Y
F003080Metagenome / Metatranscriptome508Y
F003826Metagenome / Metatranscriptome466Y
F005563Metagenome / Metatranscriptome396Y
F006141Metagenome / Metatranscriptome380Y
F006506Metagenome / Metatranscriptome371Y
F009749Metagenome / Metatranscriptome313Y
F010472Metagenome303Y
F012023Metagenome / Metatranscriptome284Y
F013757Metagenome / Metatranscriptome268Y
F018716Metagenome / Metatranscriptome233Y
F018911Metagenome / Metatranscriptome232Y
F019762Metagenome / Metatranscriptome228Y
F020170Metagenome / Metatranscriptome225Y
F024559Metagenome / Metatranscriptome205Y
F034176Metagenome / Metatranscriptome175Y
F035629Metagenome / Metatranscriptome171Y
F041019Metagenome / Metatranscriptome160Y
F043407Metagenome / Metatranscriptome156Y
F044497Metagenome / Metatranscriptome154Y
F048089Metagenome / Metatranscriptome148Y
F073563Metagenome / Metatranscriptome120Y
F093773Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000001511F000354GGAGMAKTNYDNFASFDLNEACDHFDCTDQKAWKKIRPFIVADGEEYAEVMEKEFDFEEVTDTDHMVFEAGVKYALTKMNIALDKAGIDVQVCEVDLVESMGFMMVRCDDEPEDFVKRVLKKPVMMVDSWV
Ga0214921_10000015131F002977GGAGMKIQVPAEGIMKTNDWGDSKVYRIACNCHDENHNHNMWVEADDCDIVVTIYTTGKTNYWSKTRWYHIWTLLTKGYIDTESSVHLSKQQALNYAETLKSAITDVEEFQNARRNKEERATIAKMAKEQDCV
Ga0214921_10000015133F073563GAGGMNPKYLYTIKWTQPYATYQMRPYLRHLREEYEIQIEARLDRGEFADAKKVIERIMSL
Ga0214921_10000015134F003080AGGAGMTTAQDLTNQLIHRAKNLKEFVVERDFNSIPGGIVRFNIQHTIGQPARLFVPALTQAEAEEMVDEWFEEDVE
Ga0214921_10000015137F018716GGCGGVITENTVSVVWDNQNGFWWNETCAIVLEVFGLPGERYSTHPKHDAMFFNFKNEKDADLCRILLSERL
Ga0214921_10000015141F024559GGAGGMTSAFIKLILGIALIVIVVVFGPIVGIWSLNTLFPVLQIPLTVETWCAFFLLFGSITGLRIGTNK
Ga0214921_10000015143F019762AGGAGMKELHESVAHTAKKITVRENAGSRVRLEKHEVLAPKGLFSLDIIQESLDEDGLVRDSQTYNFFMTKEELQSLANGLTA
Ga0214921_10000015144F043407GGAMTTTLKNVVSNGLVGSTVSVGYGAIPPATPLTVGTVYPAGGVSGQIYTTTGTGAHPHWITPDVLVAKNNPPELEVKGRMVINGRDLEERLNTIEKVLQIPERDVILEKKHPKLKKLYDEYITALGKYRTFESIKGDE
Ga0214921_10000015149F005563GGAMIDYYEALKEMNTGKVVKYVGTVNGNVWSDNGASFCMCRGCVFLFDAGVIKWNKLGYMVYDPDFRYELTGETVDPRAWKPEKNRDRKEIKSKLGYSRVGLGNI
Ga0214921_10000015205F002267AGGAMTGVTALMTSYGTSLPTLVYDLDAANYSAVPTTGSTVAGAGAHTITVANAGSSITWQSSNGGVFRKSNNVGTDVIYGGPDYVTGQSYTVFMAYKRIATADGRLLNTQSEASKDWLMGLYNGHDQTFYPNFAVNLPSSGADLFWHLDWATWNTSTGLGQLYSATSSSPTGTSFTGTNAGGGGFNQLRLFSRSSGSEVQTADIGFIKVYNGVLTLANVQSLYTTYRTRFGYP
Ga0214921_10000015235F006141AGGAMILEVFLYGFITAFGWWSANHYVIEPYFPPPIEKVESKNKEKQKEN
Ga0214921_10000015251F009749AGGCGGMTYSWILIIAMYSPAGDFMGKNTVGFNSQKDCEAVKIQLTNLDHPMKVRHKGLCVTREHWEGKKQMPGVAYD
Ga0214921_1000001530F035629AGGAMSEKIELKEKLAAVDMNFRTLWDEMDAEQRKALKNEYFILNRYISNVQSSKRDVQEHFVLTVNEYFNKNWNVLQKHPKLLWLLLCMCSYDKSTVFFHQWLGNKKKEGSSKKSKFLEELYPNKKLDEIEIMAKLSTDKELKDLARRHGYDEATIAKKIK
Ga0214921_10000015304F018911N/AMIDYITTFFAIFLLDIVYTYYLRCIQYEQVLKASGWSVACYILGSVAVINYTTNHWLIIPAMAGAFCGTYVGMKIRKKQFGV
Ga0214921_10000015307F048089N/AMKPNKTFKLSKTTKRMIGLMKGATADQRNQYKRMMIDAQLCSEIVIKTPTRDKNALRGNGPTGYQTNDTGTASTSTT
Ga0214921_10000015333F012023AGGAGMDQIDYEKLNERIVEQAYETAFGDTLTKEQLQKLIQDKFERARVYHEALVKAPTFSVN
Ga0214921_10000015340F003826AGGAGVDPITIGLAFTAAQTAVSHIKQAIALGKDINSLAGQFGKFFESSDAIHRERSKIKAKASRLGKTDAELGHEALQIAMHSDALRQAERELKDMILWQLGKPQIWEQMIQERTRLFKERAEAEQAEAERQLAHKKKMADMFIFAMYFIAGSVILFALAMGGVAIYGAAEEKRIYEQKVAARNALVRQQQKEREAREKKERDDYAKN
Ga0214921_10000015341F044497GGAMLEWILALALAKEPDVKKWPEWECVRWTWSGDVYNRRVVCLEWRKRENRWIP
Ga0214921_10000015345F041019GAGMIDGVKSATTALKTAQSAGKELGAVVSSQQADIEAIVQRDHKARITAKLAEEQRKSTLEYRALEKFESKIKYEQDVARLKAETIRKHGKDAWIKVEAEKALMEKERQAEMSAMDHDRQKQVDLLCWCFTAGALITYFFKLYKL
Ga0214921_10000015406F010472GGAGMSVLAELMNSGHPWAAERAQYALQVHEAVGAGQLSPSEAKEILQDLISTEKLEEGAADQQATAALVFGVTQLISLY
Ga0214921_10000015407F006506GGAMKKLITIIAFLSLTGCAGIMEKIPSRWDVNQAKVITDIQVQVNHFDCKGDQAAQLNALSLNVEWFDIYAKTKPTRDISKLTSTLTTTVKEYQDRLKTGPVSPLYCDLKVKIIKQQTEILTGSVQGRF
Ga0214921_10000015433F002869GGAMTNEITVDMLDHTIVWCEQNAFWGKGSAIQRMQDFYFEKTRASVTEDWPESFTLQELADTLGIEQVRYRIYYSEDNLTLRLFVFRPHCVWDEQKIMLDLGFVVAQEGDADNIPNKPVEAVEQ
Ga0214921_10000015438F034176AGGTGGMKYNYGYSNNVKHNDSAGDLEYFISKFDCRIEDSREYNQYRRQAPAYHRDFYDTDSFKMETEILPMKAIHLTSTNLARLVAEQEHMQQLGADAEYGKKCWADERKDRMVRDENPAVAKAYRNYQMLLELARK
Ga0214921_10000015443F001008N/AMSKAKHKPYQWIDGETADRITSLNLKDYRAYLKKELKQWKKNPKSDSNPDGYWLHPEDVGLNVQTIAALDLIISHFVVTEDEHE
Ga0214921_10000015459F093773AGGAGMYDIVKNPIPRSGLFATPTLDQIANQIDGFPAETKAQLYLVMQLTLNACHKIVEDEILSKEVFAQ
Ga0214921_10000015464F013757GAGLVLLRYNTYTQTQKEPKMLTNCIAKAKLVFNKNLKTYKLVVAFNAHKTIKPNGQVKYAFPTQAKCAYVSGDLLAENLQAELTKVLPTVYSTLRTNSVEFVE
Ga0214921_1000001593F020170AGAAGMSKRVPPLDYQDEETHERLMEAFRQYFKANQNWINKGTRRAGENMRYWLAQIRIIARERREKVQQYRVHLDETKAQKKGDTAE
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