NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000297

Scaffold Ga0214921_10000297


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000297 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)98122
Total Scaffold Genes106 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)66 (62.26%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039479Metagenome163Y
F066440Metagenome126Y
F093245Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000029757F039479N/AMTDATQGTGSKGFVFEELMDVTLRALVQPLASKGISARILNEQQIRDEFGEQSLNGVDHFMALEGATETLFLIQEKWKFVTNQREVSQFLDCCARIMARMPDYKGRVIRLWVTRTQATTNGEKSLNEGGAYVIQCSTSMSFLAQITGQFICELLGDRGLCVDMIAGMPNLLSGDTPLEPLTKGHQEKSLPMNAIHPAKIKVCVIRKD
Ga0214921_1000029787F066440GAGMPFTIQLRGLPTGAAMGDVAEAGATEEGAGPDAEDSGQFMMETSLVHIGLDIARMSMQDKHILRPVLTKLGQGSQVMAGEQGRGARLLVLYHAHLLSSESVLLLQACLEQNEGDLSIWLTSELPVPQRVRDWFVEIPVAGEDMALARFRRVAPDSVANWSDVFRGIIDKWRTMPPPRLQEVKEVKAIVYEMLMRNLRWVEATHFLLDMLLAHEGISAEQRQAAIRALASCEATGGGYTIPSYRIPILWESLFLQLRTIFCLAPVSNVEAVGDAAASASAKRAPRQRKKGVVGAGALVGAV
Ga0214921_1000029796F093245GAGLFPLTDNLKQALYISVRMAAWPDAVKTVYVLCHPEKEKARYERLIPHLLSVGIPADRMKICAPTWGSELTPEQIFAAYQPYQKRHVPTFTFKGSNLSRGEISLGMNFAAAIQAAAEGTEGLVITLESDVWLRADFVPRLNALLADAAGRPWDYISLGEGVGTRPPGIPASYYADSKAYQPPHQWVFRCTDSMLFTTEYMRRLNRTFLPFREIIDWEMNYQLMINGGKALWADPPLAEQGTCNARLVTSLPA

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