NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000366

Scaffold Ga0214921_10000366


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000366 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)85946
Total Scaffold Genes144 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)106 (73.61%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020358Metagenome224Y
F030410Metagenome / Metatranscriptome185Y
F101153Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_10000366140F030410GAGGMKVGDKVMSFDFNGIDSCYMVGEVVGIQSDGLFRAKFIKRVWEDEEDTKFKTDYFTAPMQGTMFGDNKTFPRVVVVG
Ga0214921_1000036627F101153N/AMNITNITFFNRWRNGDCFINKEYVRDIISRYPNGVTFRYAHDNHPNIVSDLNCEHVSLSSIHPIGTFTPLAQVENILYINTWVGCWIGKHLKEKDHANFYCLHDMWKEFYQALNLEMKGDYSYYHPSIDFRKFDLTEANNYLFRVDPKEIILVCNGVQQSEQSSMGDMRNIIIGLATKFPEKEFLITHKVDVDLPNVTCTDYLFSAPTGNLNQIAFLSMFVKLIIGKNSGPFTYAHIKENMNNYQKTFMCFSHKMRDCLMGEGEYLANSFFSDTVDDTKAIEICENLIQYPSYANYKKPTVELFE
Ga0214921_100003668F020358GGAMKRYKDMIKGTTLSNEEWEEQVYGPELFETLQQVDGRWALVSKKTGRPLRYYKGEGKPSDEWVAQQEREIQYFKHMGH
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Institute for Fundamental Biomedical Research
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