NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000476

Scaffold Ga0214921_10000476


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000476 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)74471
Total Scaffold Genes104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (51.92%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (46.67%)
Associated Families15

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007359Metagenome / Metatranscriptome352Y
F009669Metagenome / Metatranscriptome314Y
F010746Metagenome / Metatranscriptome299Y
F010817Metagenome / Metatranscriptome298Y
F010897Metagenome / Metatranscriptome297Y
F014229Metagenome / Metatranscriptome264Y
F024058Metagenome / Metatranscriptome207N
F024954Metagenome / Metatranscriptome203N
F026210Metagenome / Metatranscriptome198Y
F028084Metagenome / Metatranscriptome192Y
F032162Metagenome / Metatranscriptome180N
F035200Metagenome / Metatranscriptome172Y
F035215Metagenome / Metatranscriptome172N
F048101Metagenome / Metatranscriptome148N
F056412Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100004761F048101N/AMKKFKTIKDYLETCSEDEKEFIYDIYFDMSVDDLVEIIFGNLPPDDVIQEIEEYREELEWDDNEAEKSNKGKRKCDCDFVGCQGC
Ga0214921_1000047610F026210GGAGMSPILGANPLDYDAKYPQTADTSVNEDAKMFIMERNIGKEVMFQIEDGTQYYGKISYVPNSEHYCVVVDNKGTPWEWYVREEAVHFVEDIGTKIV
Ga0214921_1000047628F035215GAGGMDFRGVGKQMKSSEQIAKEISDRIVEYKALMVEHNNNQSAVDELESAIHELDHLLRWINE
Ga0214921_1000047630F010897N/AMKLINTTSYCSEKLKEIVKWCLPQGLHLKDIRKIDFGNTKIGWHGRAWGSMRAHIAVPAYSIYKKPYKSGGFRGYLPVKTYSWEESLIELVAHEVRHIYQYKKDKFFHGIKKIRKYNMGTRAKLSEVDASLYAIRKIREYRKNNIKFNLV
Ga0214921_1000047634F007359AGGAMKLTKQNLGGHWVIGIEGKRDDIEQYHNRIYNWGGTNGELQWMSETFAYFWITMEKLERVMFKYVMSSVSDKLGKKMKGSKGGLKKAVMNRVHNTINNIPNDTFVRTAQIQEFFSLGKISAEKLDTDS
Ga0214921_1000047642F010746AGCAGMTYKCAVSGEAISPERVEALQVLGVPEALWTKKEHSQTRKLKAIYAGDDGSNDIVICDNVDGGSMFENEVIAEVEND
Ga0214921_1000047643F035200GAGGMTNKFIVLRDGVRVSDDMYNSEADAQHEANFWREIIKRWPDGTKVVIKKIGG
Ga0214921_1000047655F024954N/AMKEQMKNTIETLVVGKYYQIENHIAICEMFNSTSNKKCLSRISGVGSVLAFYDEVTEVEMTPELLKQCEERKNGTMNFIGSFNESSKYKGD
Ga0214921_1000047659F024058N/AMTHRMINWNFQRKQMRENMRKNMNASEEVIITNSNNTPTYFGEIYLYEGTLVKVSYKTSANTAVVTFLEGKDKDKVGTINLNNAKLIKENK
Ga0214921_1000047660F056412N/AMKRKNKLEILLGNIDKASAELKKSIEESQKRLDESFSKYQQKVEVAHHNSMIINEKQIEEII
Ga0214921_1000047662F032162AGGMKQNLKITYETFGESHAYLLEGNLKQINHFFNSIYNWGGTNGKLHDMGNGKAFYFYAHPDDVMKALTKIAIHSLTNKINAKGRKGGLIDLARAKAQGIVDSIEKGRFLRNDSWSSVYNLGTISAEKPSDYCGAVSNGRD
Ga0214921_1000047667F009669N/AMKTMLSKIFGPNWRSSSSGIATVVAVCTAIAIHSDPSLVAFLPDNAEVYILGISKLVAVVSGIIFALTVKDAAVTGGTVAQTNEAEKRTGENI
Ga0214921_1000047668F014229GGAGMNKLNLIAVALLSVFLGACATTPTGQVDPATSVSNALPYVKPAVVLACTVVLDQAVSGDDRIEKAKMINHVATIVEGLTVGTAPTPEQLQKALNNYLPSEKTHWVNYVSVIKDIYAQQFARIDGNTALAIKVLNAIASGCKDATASYVE
Ga0214921_1000047670F010817N/ALKKFVSALVLNLIIIGCATVTPNKIEDDKSSYDASTPKQYQKDNGGLICFVGDDALITSQARERYNNLIKMYRIKFKKEKAIDLVEDSGIKPYKDTFGNELFLIDSEHLVYFGVMNSWLKEKVPADNIIDKTIDKINN
Ga0214921_1000047674F028084N/AMKKIILILPLFLLISCSEQNFESRELPTKYPETPTMGNADDATKGTLNP
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