NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000866

Scaffold Ga0214921_10000866


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000866 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53776
Total Scaffold Genes78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (74.36%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014850Metagenome / Metatranscriptome259Y
F015996Metagenome / Metatranscriptome250N
F020540Metagenome / Metatranscriptome223Y
F021534Metagenome218Y
F028172Metagenome192Y
F029659Metagenome / Metatranscriptome187N
F084232Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000086628F029659AGGAGMLHNINSAIDTFQSTKTQFVKTFVKNEELAKPLNTFIEAQTLYAKAVAVEVNKFFTTLGMSAYTFDAKKAFSKTK
Ga0214921_1000086635F014850GGAGMKIDEDFELTQNDIKYKDKDVVACVKIKTGEFKDVEFHFGEIKFAEEENPDGTFSIDFNYDIMSEQHKLLEGNQMFETQLGEILNELLKHALDEAEKRYKNELGTKDTETPDIG
Ga0214921_1000086638F015996N/AMIKVIEWYNWIVKSFGEICGWVGLILIHGSTVPATYLAIKGEPTVLPPLSMVVLIWSGLLLFFIRSAIMKDKLYMLSNGIGFFLQSIMLAFLVLK
Ga0214921_100008664F084232GGAGMQTPIPAQLENWLKIVENKRSPQDLRATAVLHLTAIRDIINKSLGATTNNQGRKKYENMSIR
Ga0214921_100008667F028172GAGGMKILSQYFGQDLDRQAEIYFDENFYKVRARNECGTYFVAFFERVDDAENFAENYVMGETHEP
Ga0214921_1000086676F021534GAGMKTKTENEVIHFLKELLHPEGFGWAVTPEVSRESKRLLIMIESESNEQDSTIRQTA
Ga0214921_1000086677F020540N/AMSKIQQFGRPHETFDPNNKRHRKIFHDVMQYRTWGRSPICFWAEDDSSGSNSLMDQCIKAMGRYYMEKEFGEIRDNDPFLSGETVRNRPNPHPYIYTRKSILA
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