Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10000884 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 53344 |
Total Scaffold Genes | 79 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 68 (86.08%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003640 | Metagenome / Metatranscriptome | 475 | Y |
F004305 | Metagenome / Metatranscriptome | 444 | Y |
F015965 | Metagenome | 250 | Y |
F020493 | Metagenome | 223 | Y |
F048114 | Metagenome | 148 | Y |
F082122 | Metagenome | 113 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214921_1000088411 | F048114 | GGAGG | LTGLISGKRVWNEGEGDDEYRHRCLVRGIIKMRVKDRQEAHVWLFGGMGKDGKYFKGWNALHPDSRLIEDIKDQWSKGNRGSDGEWK |
Ga0214921_1000088421 | F020493 | GAG | MLWCIAMWIVFCGFLIYLTELSRKEEVYKLNCELLMGGWHPDIPKEFAKFCEEAKRTMRSDR |
Ga0214921_1000088438 | F082122 | AGGAGG | MREETLLQKIAIVIMFIAALLLMVWVPDFTLSQEDCTKQSSYAYVDNLCSQSKTN |
Ga0214921_1000088443 | F004305 | AGGAG | MATTDKEQMSEETNQHHRMASGAWITGCELKETSKATMPEANSDHGNFSQPKGVDKSNA |
Ga0214921_1000088470 | F003640 | GGA | MAIALVYDPRYHTWNSWTSLMCEAYAAQQLSINTPEEEWKQWAAGLKAIDLFVNEGIPSPYIYENWQDWASALVGAVNQSTEETAT |
Ga0214921_1000088473 | F015965 | AGG | MLVDSKKKELGTEAILMIAAQETKSKYPASTIYAAMVKEMNMQGTSIVRNGNTLFVVHNAEGRVGVFRALNADTARNYLESSYAFIQGAYKMGFDTLVSEFEDPTIMNIFKAISRNPPQEGMGYRAEKTNKGFRVTVKLGPKRAERE |
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