NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10001127

Scaffold Ga0214921_10001127


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10001127 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46387
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (65.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000264Metagenome / Metatranscriptome1424Y
F004092Metagenome / Metatranscriptome453Y
F038549Metagenome / Metatranscriptome165N
F091304Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000112712F038549N/AMTQLISVNDHTGFPPVFLNAYVLEELKKFKGVDGSPLMPIGPEPFQPFFPAQVPDSVEGIYNDIPFIRNNPDTTVIIFDRLMRFRPTPFYKHKREQLIYFIYSPNLSKLIDTTRVIIECLDREDAAAQDLNLWISQNDVLDENEEVIAKNVFFHNLKVYQADESRDIIELASARTLGLNKLVIEYDYHTVSVEGSNQRYS
Ga0214921_1000112723F091304GAGMIFCNKCAGRLFIDRQYTSVQHMETYCIRCGSRRFYHPPTESGEGRWLLAKELSRAKLTITSL
Ga0214921_1000112732F004092AGGAMSNNFTIYPGKFPCKTCQEEVSSLRYWRETGEATWMCSKKHISKVGLIPPKRKKKDFVNE
Ga0214921_1000112739F000264AGAAGMPIIMILMRLRLTNNPMTGKLYTSEVWLRKRYLIDKKSPQDIAKECGASIETIYVYLAKFGLRKSKR
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Institute for Fundamental Biomedical Research
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