Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10001441 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 40615 |
Total Scaffold Genes | 75 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 54 (72.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000264 | Metagenome / Metatranscriptome | 1424 | Y |
F004092 | Metagenome / Metatranscriptome | 453 | Y |
F004475 | Metagenome / Metatranscriptome | 436 | Y |
F006885 | Metagenome / Metatranscriptome | 362 | Y |
F018928 | Metagenome / Metatranscriptome | 232 | Y |
F068817 | Metagenome | 124 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214921_1000144112 | F000264 | AGAAG | MTMTFLKQKLTNNRMASKLYTSEVFMRKRYVMDKKTPEEIAKECGCTVETVYVYLAKFGLRKSKR |
Ga0214921_100014413 | F004092 | AGG | MSNQKFSVYPGKWPCKTCDEVVTSLRLWQETGTVSWMCSKKHISKVDLIPNKKRKRDYLNEK |
Ga0214921_1000144139 | F006885 | GAG | VDSLKIFFYALPAALTFMAVWFILKVSNKDRKIFLKKITYRQSNIYEIIKDVIPKEMFDKPKVITQSQKHVQKNMLKVVIADDMAYWTVDNVFYTANSINGRIDESTIKPIDMYSMSNKELKKMMDILDDLNKGVGPNDSSSAGDDRI |
Ga0214921_1000144141 | F018928 | AGAAG | MEKIINKNDNLLWDGWDVIDLKESDVAKTSVNGIRIKDKWYIHKVYKPGRDGWDIPNKYR |
Ga0214921_1000144163 | F004475 | GAGG | MSNWTEELTEKQKEEIWEFIVFTVKEIRDQIAVDIEGTSVLWKAKGLNKSRRTQKAFEISAAIARGQNEVQTNATK |
Ga0214921_1000144173 | F068817 | N/A | MSNVDDFLKDPWKHFNEMRKTPHVCDYNYIVDSISGQPAFFEICKLCLDTKGVIEMDN |
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