NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10001567

Scaffold Ga0214921_10001567


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10001567 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38666
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (80.60%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002722Metagenome534Y
F016149Metagenome / Metatranscriptome249Y
F026194Metagenome198Y
F032583Metagenome179Y
F064523Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000156710F002722GGAMAGRTGVRSTLYTFLTTPTISGLNQVFTSFPKRINYQVNSTAGQLSRAAVVIFIQSERESRIAVGGATNGWKRVDYSVILQVYQHSMERDSTAAMTTFDTLIDNIKTRLRSDHNFGDTTGTLVWQGAEPEINTTYGEPATDNGGATETFAEIQFDVTEMIQA
Ga0214921_1000156712F016149AGGAGGMRRMVAPDRGVRETVVGNTTYQPSKNGIYAVESSKHADAMKREGFFEASLNPISKDDGQKGYCCVECGFNGWFRKCGRCGHESTAIQKDGD
Ga0214921_100015676F064523N/AMADRFGYTPKEVDDLPAQTADWLLAIAATVEEVKIEMAERTK
Ga0214921_1000156762F026194GAGMAYINQPPDLRAIQADIEARLRKLETAQRFTVPIVTTDPTNPRNGDMWYNSTTTTLKFVNSAGIIKTITLT
Ga0214921_100015677F032583AGGAGGMSKQVKLPSGATVTLKDPSLLRVKDRKRVMKASDSAEGELSRALQLGDALIAMLVEEWSFDLLIPSIKMESLDELEIADYDALVEATKDAQDALFPSIAKTIKNEADPKADTTNSKG
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