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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10001639 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 37608 |
| Total Scaffold Genes | 47 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (36.17%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota | (Source: Euk_MAG) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F039479 | Metagenome | 163 | Y |
| F066440 | Metagenome | 126 | Y |
| F093245 | Metagenome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_1000163915 | F066440 | AGCAG | MDAISLCWRGMAGTGKKTRLHDALKQVSAIRGYPFTIQHKPISADSTVGDVLSVGATEGGVGPEEGDIGQMMVETSLVHIGLDISRMSMQDKHILRPILAKLGQGSQVLAGAQGHASRILVLYHTHLLSSESILLLQAFLEQNEQDTSLWLTSELPVSQRIRDWFIEIPVGGPDRNVQACRTGEVQLANWPEIFTALIDVWRKRQAPRLQEIKEVKAFVYEMLMRNLRWVEATHFLLDVILKHREISDEQRSRAIKALASCEATSGGYTIPSYRIPILWENLFIQLRSIFYLKEAAIVDAPPRPGRVSKARKKGVEPASTQLAGM |
| Ga0214921_1000163944 | F039479 | N/A | MTDLSGQGAKGFVFEELMDQTLRKLVQPLASKGISARLLGEQQIRDEFGEQSLNGVDHFFLLEEGEPVLFLLQEKWKFVTNQREVSQFLDCCARILARMPDFKGRVIRLWITRTQPTANGEKSLQEGGAYVIQTSTSMSFLAQMTGQFICELLGDRELCKDMIATMPDLLSGEKPLDVPRRSVEEKTIPANAIHPAKLKVCVVRK |
| Ga0214921_100016395 | F093245 | N/A | MASARPWPDAVKAIYVLCHPVKERERFERLIPHLVRRGCPAERIRLWSPTWGSELTVQQIFSAYNPYLDRGIPTFSFKGSTLTRGEISLGINFATAVIDSARKKDEGLIMFLESDIWLRDDFVPRLWDLLRDTEGRPWDYLSLGEGVGTRAPHAPSSYYAPTKAYAPPHQWVFRCTDSMLFSTGYLRRLAHTVFPFKEIIDWEMNYQLMLHRGVALWADPPLAEQGTCYSRILTTLPA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |