NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10001702

Scaffold Ga0214921_10001702


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10001702 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36992
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (83.08%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016149Metagenome / Metatranscriptome249Y
F032583Metagenome179Y
F051711Metagenome143Y
F051715Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100017025F051711AGGMAYINQPPDLKTIVDDLKNRLRLLETSNRFTFPNVTSDPADPRKGDAWLNTTTNQAKIVDKNGTVRIITWT
Ga0214921_1000170255F016149AGGAGGMTKLVAPDKGVKETDIGHRRYKVDRGGLYNVENKSDIKAMKAEGYFEASLNPVTHGDRNRGFTCVQCGFNGWFRKCGRCGIESEAIATDGE
Ga0214921_1000170260F032583AGGAGGMKKTIKLPSGATVTLKDPSTLRVKDRKKVMTTADQAIGGDLSKALALGDALLAMLIEEWSFDLLIPSLNLDSLGELEMKDYDYLVDQTKEAQSSLFPNLADTPTNEADPKVPTANFNA
Ga0214921_1000170261F051715N/ALLEGGHRVENFEYPDEQWYYFQMADRFGWTPEQVDELPAGQADWLIAIAATVEQVKADRLNKS
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