NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10001858

Scaffold Ga0214921_10001858


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10001858 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35337
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (46.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004256Metagenome446Y
F019784Metagenome227Y
F024484Metagenome / Metatranscriptome205Y
F029568Metagenome / Metatranscriptome188Y
F043882Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000185813F024484N/AMITQTKFTVDTTLFADACNHLPKDEMKTPINYPTGNFFYDPWVLKDEYKGTVWEILYNSLPVTKGEARIIILDPGQAYQSHADIDDRYHLNILGSKSYLIDLENNQMYFLDANGIWYDMDAGQIHTATNFGRTARIQLVIRKLLLNNVLKDPLPVTIQTTLKNLDQARFIFDNTISPWLNFANKRKYINNFSYTNNQASFNIEESVLYILKNILPEEFVLV
Ga0214921_1000185819F004256N/AMNTQYNYYYNNVPGQEPSRNNLIYTSLMSDDQKTFVQWYFNDTEYHQGKNEVVDPNKMEEKWLREVNYLTQMRNRFPELVPKIIKIELDNKKIFLEVDGPDFWNLAQCDVANYDKVLPDWQEQMLNIIQIHKNLGFYKFSMHPSSYFVVDGKLKSINYFFTYNKNEGPISIADHASHIYSTRQEIMREQVEAMGLDWYKPQPLDKLQELCFESFRTNYPASFIEKAKRIYEQE
Ga0214921_1000185822F029568N/AMYRYDLSNTEIKIYYETCPEFEAIREICLQEDNWLRKNYIKENLIVEQHTGYGVVYQKSSGKPMVMGGVFNDGRYPKNVAKQINRLYTFPEFRMKHTDMTDGFRVTCSLIDALETVNDFDVYLITMQNRPRGGKHWWDTWVHHMDTASNGKWTLGTGYIQTCNAQVQKCWQNYVYYETKQGAFDKWAPIIINDEGWAAMPEGA
Ga0214921_1000185824F043882N/AMGTFYIPKPELSYIHVPRTGMAMKKIISDWLKPNFNVIDEDPWMINHPNLQMVREHIPTGKTLSIVRNPWQRVYSFYRKISTEGYWLDWNGKTLLDLKPINEWVADYCDPTVPFEFPRWFNKSTNQIEFLNYNGKWVDFIIKAEDLEIGFKPVQEYLECKIPLPDISGYDHWEFKKYFNDASIRAIATVHERDIDFFKYSI
Ga0214921_1000185838F019784AGAAGGMINLNIFELNKIKKICEEVGTEYFTLEQTNASGIGSVLTFTYETEIADHPATISIEVRGVDNW
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