NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10002176

Scaffold Ga0214921_10002176


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10002176 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32260
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (81.63%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F011386Metagenome / Metatranscriptome291Y
F017133Metagenome / Metatranscriptome242Y
F021757Metagenome217Y
F029434Metagenome / Metatranscriptome188Y
F048982Metagenome / Metatranscriptome147Y
F087194Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000217611F029434GGGGGMKKYTFGVWLDIDAEDEEMALSLFDSVVKNTFVSDSYCFEWKEVEQ
Ga0214921_1000217613F048982AGGAGMTINTELTDVLSTCRQIRGNDRDSGAHYLLGYLWATLSEKQRKQIAKTFQNDLNEQEKNK
Ga0214921_1000217617F087194GGAMKLDEYKQMVEAQRLSSLAIAMDALRKSKAIQELESEKNK
Ga0214921_1000217618F011386GAGMIDITITTMQGNTRKVKLMSKQEALDFVELFKSTLHANQRVKITCDLLGINGYVQGTK
Ga0214921_100021763F000808AGGAMEYNYSLTIAYDGELVSTTRSADMLEIVSAWNKCVDFGDAKEYATYNLSDPIGKMYTKTFYRNGNVSVK
Ga0214921_100021765F021757GGTGGMMTRKDYVAVAEILSSYKDLIGDEFTFEDLVEDFSGMFAEDNPNFKHEIFREACLKNNF
Ga0214921_100021768F017133AGGTGGMRNRLMRTTFAKATHYPLGMMNTCPCGQVVLAPALYHEGEPYWENPNKCKELFEKGQN
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Institute for Fundamental Biomedical Research
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