NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214921_10002198

Scaffold Ga0214921_10002198


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10002198 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32110
Total Scaffold Genes82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)79 (96.34%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041160Metagenome160Y
F047653Metagenome149Y
F059956Metagenome133Y
F065782Metagenome127Y
F067675Metagenome125Y
F073469Metagenome120Y
F103148Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000219838F073469AGGAGGMARTLKDVTPKHRVQRTLETIRLLRGFDRAAHFAAGGTLEAWRGRSDVRPDKRKSGNRRACRGPVRDD
Ga0214921_1000219843F103148AGGAGGMTRKFTNKLLEAMDEGLINSHNLARNLLGYMSERDVQRFVEAEGYFDHEEEDEE
Ga0214921_1000219847F041160AGGAGGMANKNVKVIEVSQVDGKLTVFGTVGETPFTASPFQWGSKMLMKVEAEGLDRGSRIAIGHAAKRALKVAELALPEAVLKRPRKAKVEAEPVQEVTQVEELPVGFSTLDEALASLE
Ga0214921_1000219859F065782AGGAGMATRGVVGYIQEDGTFLGVYVHYDCYPSGVGSFLLKMNPEDIKTMVTAGIIKGGIRSIYGSDLAGVEYFDESWPEAKRTQLPGGEEYDYILDTDGSLTCTDRDGNDIPLDQWHR
Ga0214921_1000219860F067675AGGAGGMALIITRPTQSTTFPDGSGRNAVVRNDSGQHFLVSEVHRGQGFTRIDETLVFPCTAEGEVTEWCEVWSGNSVEDVLSTFNG
Ga0214921_1000219874F047653GGAGGMQSGDLVFIMGHPSRPIFGTRTVGGLNCTETIAHGTPALVVDVDNDCAAKRVHVKVLVQGMTLWVPGGFVKASNEAG
Ga0214921_1000219876F059956AGGAGMPIGPANIVIVPQLKKGQLVRVRQGVVGIRATTGAERDVWYEKFHADCRAGRDVPYDSGGEPRLAPDCTEVSFSVGKCLTVTAAAASYRRIGKSWWQSPKGGLCQVLDTVTGQEWLVSKRYLEVL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.