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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10003621 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 23447 |
| Total Scaffold Genes | 41 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (73.17%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030376 | Metagenome / Metatranscriptome | 185 | N |
| F033721 | Metagenome / Metatranscriptome | 176 | Y |
| F037622 | Metagenome | 167 | N |
| F039994 | Metagenome | 162 | N |
| F057984 | Metagenome / Metatranscriptome | 135 | N |
| F069832 | Metagenome | 123 | Y |
| F091592 | Metagenome | 107 | N |
| F096882 | Metagenome / Metatranscriptome | 104 | N |
| F102823 | Metagenome / Metatranscriptome | 101 | Y |
| F102824 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_100036211 | F069832 | N/A | MDEPSGTPTAHKAKNGKFKFTPEIEAKILDACGSGFTIEKAGALVGVNPSTIRTWIQRMPKFGERVETARKNHELSLLKSIEQAGEKSWQAKAWLAERIYHHAIPSSRLTVDTSVTHNAGAGFAQLLAGLASRRAEKKAQVIECQNVKPLEQHKSKYNSYCATDATQTIVTSMPLENEKSSGKARHVRMKRRKPRGKAMDTTTPPATPPAPV |
| Ga0214921_1000362118 | F102823 | AGGA | MNTLMEWIAVGAGLAIGKLLVAIAVITIVTAILAVFFIMEERSK |
| Ga0214921_1000362125 | F057984 | GGA | MRNHDSNHSVPGGLSILALGPREKGKINMDGLGKIQILAERKVEMVELDIEVDDKTRDTVCHAALREITSDGDALFNYGFNQAIKRFIQTKGKKCTKKSSNKKRSRR |
| Ga0214921_1000362126 | F091592 | GGA | MISAQFTRGDEDDRIKQLAGEVAIRAMQDIKLLQRRGVLDGLRLTKNRIGKLSDCNCYRDIKEVRSLVRDVKNGTVLFWCKVAGVRIDQATLNRVIKRGVGNVN |
| Ga0214921_1000362127 | F102824 | N/A | MTPVRVQREDGKWRVTTMAGNPIGPRLWGAVPPNGLPSIEDLFEDKAKAQDAADLWNAYAMWCQERSGKRKRR |
| Ga0214921_1000362130 | F033721 | AGGA | MRWIKKELDEEGKPEWAVYIDKTGESNESEWSHFDTYKTRDDAVQACWRFTWEDYDCSNK |
| Ga0214921_1000362131 | F039994 | AGGA | MENPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPNPDEAGENALDHLERAVVRALFAWMQLKKGLPKL |
| Ga0214921_1000362135 | F096882 | AGG | MANNQRSLKESIRAWRTFEDALKNMESFEACAKWVIDNPQICKKLSGTGLMAVMKEDLKKKLD |
| Ga0214921_1000362137 | F030376 | GAG | MKAIIIAMAVLVAPVMGEDDDGDAADFVGAVLKRNGFSCGRGCVISEDGGMAYSSSSGRSIISTDGFYYKSGSSVVGKDDTFISKSGNFFYGTSATIKAGSAYMNGDAVWVGSQEEDND |
| Ga0214921_100036217 | F037622 | AGGA | MTEDQIIKAYLSRLGKKGGSVTGPTKARKMGKEHYQMVAQRQRERWDKWRLENGRPAIKRER |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |