NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10004001

Scaffold Ga0214921_10004001


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10004001 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22123
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (39.39%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003904Metagenome / Metatranscriptome462Y
F014128Metagenome / Metatranscriptome265Y
F033033Metagenome178N
F057138Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000400119F057138AGGMKRILTLLSLIASLFATKAFAENLKASTEAGYTTHYIVNGVARTEAQAFGGVNIGATYLGVDAYLGATIIPASAVLDESHWLAGVGKGFKIMDGLTVRLDGQAFRHQTAIPGAPNSTEVAAIVALENVVVTPYVKATHDLDLDQTGYIIGLKRPTDVFGWFTITPLVEYGKFTDYDFKTAKVTVSKVLFNHLEPFAEIGYYDNNFGVTKYNFAIKELDNSVVALGGIRWNF
Ga0214921_100040012F033033GGAGMKAILEFNLPEDQKQFEIANQSADMHAVICHFAERLRSYRKHGNDFENVSEALDTIHTILYDELNARHIDIHD
Ga0214921_1000400128F014128N/AMEQLQKMGIQIGFLISGLFGSILMATKNDKTDAKSVVLSLVGGMSAANFLTPVLVDTLNIVNVKHQNGVAFIAGFLGLKLVELVSEKFLEKVSGTQKKKTPKRKPKKS
Ga0214921_1000400129F003904AGGVKTLILNIKKYLLVVLLPTAIFVILAMSSLKDVEQGYARFRFGRDITLYLRKSTDQLTYLGAAYTTTSDKKFLDQFNSHLKEREKYFNEEIVINKMLTQEELKEFRKGLDISNDLAKDVENAAFEKMDNKAFFGDKYLDYKKKIYENINSFRGLINDSSEKIIKDEAKLLNIYLYCLAGIVLALVYLIKYDNVVAVKKKPIKKKKK
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