NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10004555

Scaffold Ga0214921_10004555


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10004555 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20306
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (83.72%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001459Metagenome / Metatranscriptome690Y
F002826Metagenome / Metatranscriptome527Y
F003304Metagenome494N
F004010Metagenome / Metatranscriptome457Y
F014827Metagenome / Metatranscriptome259Y
F019450Metagenome / Metatranscriptome229Y
F020665Metagenome / Metatranscriptome222Y
F027439Metagenome194N
F037193Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000455510F014827N/AVLRAILEIIAAVFRIIPGWKEKRTQNLENDWRKNREAIDRDLPGESWWLRNNDTSNKHNGSS
Ga0214921_1000455518F019450GAGGMTTYAVYNSIGQFQARFLTWRSALRWAIREGMEWSAVIRKEVGE
Ga0214921_1000455530F037193AGGAGMKSKDELAMQVKKEWDKQNLRWKLWLEAGGFTTEIFCYSSAEEEYFKCVRELVDHAYQMQSV
Ga0214921_1000455531F002826AGGMRVESKDRLKWSRNMLLIARDKLAIERDRVSHGHAIDLIQIITMVDAAALIAKEILEDEKQG
Ga0214921_1000455532F004010AGGAGMPLGKNVSKNMSELAADNRKKGSERGAGGKPRSRKQMIAIALSAAGKSKPRKFRMRSGS
Ga0214921_1000455533F027439GAGVKSIYKYARLEVNALAEMLDKNACQPGRLLESNASPLAWIMNQMLYDKFHGHGWVLGLLAGSFVKQKENKQCH
Ga0214921_1000455536F020665AGGAMRKRKGKSIKLVKTEEYKAVKIFVDVDDDLYEALAEAGKQHILKDKMACFEYALNKALLELCEEVR
Ga0214921_1000455539F003304AGGMKQAMVTQSFGEDWQKILDLTRPRMEAYCKRHNCDFILIDKPLTHPMQYSKSAIGNIMATKGYDQVTFVDADVLITADCPKLSDDAGVFCAFDEGAYLDRKPEMVKLAGAFGGMIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLAGQIKEDEAKLVGLGR
Ga0214921_100045557F001459GGAMRKLKAILAFIRDQEWVNEPKWEDEDEKAWTGFLSTPTGQKLSLILLNLTLRQNASAVMKKPEELADACGRAKGFRGCVATLESLASQKLNSAIPGYGDGSDEPVAD
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