NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10004895

Scaffold Ga0214921_10004895


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10004895 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19310
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (64.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003582Metagenome / Metatranscriptome478Y
F037227Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000489524F037227N/AMANMTVLESIVEEVAQELYQKLWNAIPSEEQTEDSSKAIGLNSRETTLFVIQNFMNKFNAAAEELKDQEEVLTPEPHIVK
Ga0214921_1000489536F003582N/AMNTYVIKLEVEAHIQAFSEDDARDYINDIFGVDDEVKNVKLLSVKEK

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