NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10005138

Scaffold Ga0214921_10005138


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10005138 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18694
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (77.08%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F000852Metagenome / Metatranscriptome860Y
F001781Metagenome / Metatranscriptome635Y
F026561Metagenome / Metatranscriptome197Y
F037227Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000513819F026561GAGGMSDINGTGMEAPPNPSPAGAVTSREATRKNPKQGLRPGIKVDTNKHGIRRETNLVPKPPKKFGRKKV
Ga0214921_100051382F000263AGGMNNTIELPPHLQRMVNYDINGLDIMHGELKNLMLIWEKQLENAQEIEDESGDAMDSMERKYFEGFLDSLVALYNLTYQLSFAIGIRTENRKDGHL
Ga0214921_1000513827F037227N/AMANMTVLEEIIEEVSQELYQKLWNAIPVEEQTEDSSKAIGLNSRETTLFVIQTFMNKFNAAAEELKDQEEVLTPKPHIVK
Ga0214921_1000513833F000671GAGGMEKILCYSCSKTKNQLNAKRSSLLPINLLMCESCITSKFEPRWLIILAGRSNGPDYVRDYVLKKRYVGNEISASELLV
Ga0214921_1000513835F000473AGGAGVFIDKNKDHFKHGINQWTGDPNKPVFYNNDMAQKIKQIKVPVMGLQMDIAKYPDFLAIKLYEDNFIFFEGIKKEMVIDYVDKVKKVIESYGVRCELIGVPSERVL
Ga0214921_100051384F001781AGGAGMKPDDKDKLNECLKILDTTDLGLSLVWLWTWSTINNIFEDETYKQKCTIDEMWDHLCEAVEAGQGFSLEYGAEQHQDDVLEWMMNREYIVDTMFEEEEEENEDD
Ga0214921_100051385F000441AGGAGGMKMTDTYLNDQLDKAQKLLWGGSETENIEAHNIIARLIKDREGLIKNS
Ga0214921_100051386F000852GGAMTTKREYLKQQGITVGARGRFSGAAKVALQEAVAKGVTFTAEPKVSKAK
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