NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10007079

Scaffold Ga0214921_10007079


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10007079 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15074
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (72.73%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F002406Metagenome562Y
F006182Metagenome379Y
F010161Metagenome307N
F010618Metagenome301N
F060914Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000707910F010618AGGAGMSIQELIAKLQEIEAKYPQYSQDTEVVLAIHTENDFNPEVQLDYIDEVVHKALDTHSGYICRIVLCGEYYQED
Ga0214921_1000707912F006182N/AMKTLQFNVTGKMNVPDDVIYHYDVAGKLYALEFNDIMYMLQMCIVAEGGAWGNETITEYDVMENHSIKNVRYDDADFVAIEN
Ga0214921_1000707919F010161AGGTGGMTKKNKMLYDALIDYVSYFYNYPDMPESAKMNALKIFEHLLDERIDVNDFIPVMRQMQLSLDMVQYI
Ga0214921_100070796F002398GGAMIPFFLILSSLNSINNFVSLKTYISENAKIYCQVYFINEDIPNFPRVNVIEKNKLDFFAYLDTIDIEHKRIGSYYFFMRKQK
Ga0214921_100070797F060914AGCAGMQLKRLIKVRSDISSSIFPIELYQVDDYFTAEENGIELFRFKSQHLCSIKAKELIRRRKNEKNARVIQDIEELKSLGIL
Ga0214921_100070799F002406GGAMSDRLRDELSSEYDDRTKDLIIRAFMRGLYQDESIVEELKSSSLIESNYFEDDDETDIDG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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