NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10007445

Scaffold Ga0214921_10007445


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10007445 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14600
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (91.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047653Metagenome149Y
F065782Metagenome127Y
F067675Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000744520F065782GGAGMATRSVIGYMQADGSFIGCYCHYDGYPSGVGSNLLKMHAEDIRTMVTAGIIRGGIRAINSPSLEDVEYFHEDWLEAKRTQLPGGEEYDYILDTDGYLTCTDSSGEDIPKDQWHR
Ga0214921_1000744522F067675AGGAGMAITITRPTQPTTFTDGTGRNAVVRNGSGQHFLISEVHRGQGYTRIDETLVFPCSADGEVTQWGEVWSGDSVEDVLATFRG
Ga0214921_1000744536F047653AGGAGMQAGDLVFIMGDPSRPILGTRTVGGLNCTETITHGTPALVVDVDILNDAAKRVHVEVLVQGMTLWVPGGFVKASNEEG
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