NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10007993

Scaffold Ga0214921_10007993


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10007993 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13889
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (85.19%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019308Metagenome230N
F024770Metagenome / Metatranscriptome204Y
F025725Metagenome / Metatranscriptome200Y
F036203Metagenome170Y
F041730Metagenome159Y
F053995Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000799320F041730AGGMALPTTLSTCTVVGTYVDLSGNPVRGSINITPQTILKEVTQNVIIIPVVIQKTFDATGSFSVVLPVTSDTDVTPQPFIYTFEENFTGGRTIELALPLSVAGTTQNLADLLPALGSAEAASYVSVDAYQALLTRYNTSNSIRVLVVDADVKATDAATYATDASKAASALANYNINQLMMMG
Ga0214921_1000799321F024770AGGAGMAVSHQRVSVGTTATKLTSDYDGKDGQTINVQNPSGGADVYLGGEGVTTTSYGYLLKADTNFSIELQDDEKLYAVVTTSTQTVNIIRQGT
Ga0214921_1000799323F053995AGGAMPQVNRISRGEVSVGAIQGSTGDMVYGLDFGTASVDPASITATTRGSVTFTLTGAKTTDIIIVNPPADLNDDLIFCGAAVSAADTVSIYLYNPTASAINDTARTFSYVWIDMTA
Ga0214921_1000799327F025725N/ADDTMQVLKSMGISSYRVSTPPGYAGIQVNLPNDSQAFFVWTKIDQTDFHFRLARFWAEENPFSMWVSPNLIEALTKTRVLANQ
Ga0214921_100079936F036203GAGMAEMQQPMSSSDAGNVTGSSSKVQRARGVSDAQGVNPKINQDDFFRDLDSLVGFDRQQTGCSIGRLVAKLDEPLRSKLNEIMRNEKVNSARLGEVMLAYGLQVSSSDVLRRHRRRLLGKDGCKCPNES
Ga0214921_100079938F019308N/AMAKSSFTLDLFGDKELVNALKAGEEDTPQAIAQAIYEEANVIFAKSQVLVPVDTGVLRGSGGVSAPQMGNTGYFVDIFYGGPAASYALYVHEIIGNYHNPPTQAKYLEQPVMEAMSTIQENIKGRIIDIIKKGHRG
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