Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10007993 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13889 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (85.19%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F019308 | Metagenome | 230 | N |
F024770 | Metagenome / Metatranscriptome | 204 | Y |
F025725 | Metagenome / Metatranscriptome | 200 | Y |
F036203 | Metagenome | 170 | Y |
F041730 | Metagenome | 159 | Y |
F053995 | Metagenome / Metatranscriptome | 140 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214921_1000799320 | F041730 | AGG | MALPTTLSTCTVVGTYVDLSGNPVRGSINITPQTILKEVTQNVIIIPVVIQKTFDATGSFSVVLPVTSDTDVTPQPFIYTFEENFTGGRTIELALPLSVAGTTQNLADLLPALGSAEAASYVSVDAYQALLTRYNTSNSIRVLVVDADVKATDAATYATDASKAASALANYNINQLMMMG |
Ga0214921_1000799321 | F024770 | AGGAG | MAVSHQRVSVGTTATKLTSDYDGKDGQTINVQNPSGGADVYLGGEGVTTTSYGYLLKADTNFSIELQDDEKLYAVVTTSTQTVNIIRQGT |
Ga0214921_1000799323 | F053995 | AGGA | MPQVNRISRGEVSVGAIQGSTGDMVYGLDFGTASVDPASITATTRGSVTFTLTGAKTTDIIIVNPPADLNDDLIFCGAAVSAADTVSIYLYNPTASAINDTARTFSYVWIDMTA |
Ga0214921_1000799327 | F025725 | N/A | DDTMQVLKSMGISSYRVSTPPGYAGIQVNLPNDSQAFFVWTKIDQTDFHFRLARFWAEENPFSMWVSPNLIEALTKTRVLANQ |
Ga0214921_100079936 | F036203 | GAG | MAEMQQPMSSSDAGNVTGSSSKVQRARGVSDAQGVNPKINQDDFFRDLDSLVGFDRQQTGCSIGRLVAKLDEPLRSKLNEIMRNEKVNSARLGEVMLAYGLQVSSSDVLRRHRRRLLGKDGCKCPNES |
Ga0214921_100079938 | F019308 | N/A | MAKSSFTLDLFGDKELVNALKAGEEDTPQAIAQAIYEEANVIFAKSQVLVPVDTGVLRGSGGVSAPQMGNTGYFVDIFYGGPAASYALYVHEIIGNYHNPPTQAKYLEQPVMEAMSTIQENIKGRIIDIIKKGHRG |
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