NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10010262

Scaffold Ga0214921_10010262


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10010262 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11625
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (70.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001713Metagenome648Y
F001799Metagenome / Metatranscriptome632Y
F056607Metagenome137Y
F059761Metagenome133Y
F102704Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001026216F056607GAGGMATAPVYYSDQTVKDYIANQFSGLSGDELYKAVANEAASKGVSAEQIGRVLGFDTGAVNQYATNVGKPLAAEKEVLNNVIDYAYNTQYGRDATAAEKANAAKYLTTGGNSGTGTGVLNYSTEGYNYDTQSIISGYRSALGRNPTQTEYVSAMANLGYNPYDATVLGAAGKLSANVAALESDPFAGRYANENPYGVYDPTTQTYKLDGTVPNISKNVTGNSVQFISPVTQQPIVTSFVDGKLVVKEGVNTLTGEQAQAAINLALGTGALTGTEYKNLTGALANAKSMDDVYKAFGTPQAVAALDPNYGFQLGVGKTLEQAQANSTGIQALVDKLAAENGGRLPANFSVGALAKANNIPFQFGQEVYDKAYMTDSGKKIDTLAKAPTSQFNFNPANIYQQPTVAGQFRELFPSFGESKRLAQGLINERPTTQSIVNMIQGQPVNTANLMGNLAPTQTVMPNAMPTGLQTGMPIGLPMGTSVGGQPSLSNILSMISK
Ga0214921_1001026217F102704GAGMNYQELVGLVGGRNPQDVSYQDIVSGIQSQYRPQTKFGRTTSLLDMIGSQLPDQPRIAYGSLLQPSGLPPSINLGATVKNPDAAASVDSGVINLGNLDTGKITGNTAIDNTLVYNNDFTKNTGGVNLDTSGVSNGLFGTKVTGTDIANVASTVAPIAALAGNSDLVKTAIALNLIGSAADIRTEQDILNLGTKIAMLAAGPAGNALAAGLGIASDNTPLTVNALLGLTNPTLSLVNSIAGNLTGYSLGDIVNGLLNTPEGTVGEYGLLGAANLAKTNDASRKRAGEAYDSLAINDLRVLAELGDTEARDKLLSMVSGGSSTYNPISELGTARGNSYFNLFTPIAGSGGGGKVDYWTSRAINAE
Ga0214921_1001026218F001799AGTAGGMQNDKAILAQWAKNLLNDDFFKEVLNNLKNEQISVIINTSAEECDRREDAYRHIKSIELITGHLEGLASETVIREKKWKIL
Ga0214921_100102623F001713AGGAMKYEFDTTTGEGSVIVTVVMSCERDEEGTYNENIDEVWFEGRNVMGIFTDAQFKELEIEGCMRLSKHILEEADEAKIAAYE
Ga0214921_100102624F059761AGGMTELNLFERAMGWRKRQMVTSQVGRNEIIEKIRNDTLEEIAQEFDKMKSFGDTSQSFATFVRNKKVCPPCHGNCNQGRTCPAR
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