NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10011203

Scaffold Ga0214921_10011203


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10011203 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10937
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (67.74%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F001280Metagenome / Metatranscriptome732Y
F006846Metagenome / Metatranscriptome363Y
F013414Metagenome / Metatranscriptome271Y
F014017Metagenome / Metatranscriptome266Y
F026561Metagenome / Metatranscriptome197Y
F077310Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100112031F013414N/AYLTDQPFYTVDRIMELIAQTIRWQANRYNDELDTEDGIYNSGMTSEGLFLANELNQTLNRLIKTYKWENIKLPADPDKIIRRLPKVEEQSYRHSWLHDTTKKDPVLISHPFI
Ga0214921_1001120312F026561N/AMSNFTKDDGTGMTPPPAAGSASGAVTSRDATRKYPKQGIKPRMKIDINSHGIRRETSLDPKPKKTRPKKV
Ga0214921_1001120313F001280N/AMCIECGCGAVGSEAGIIPVVVTDVSRDGESGLTLDMTSTPEQTRQFINE
Ga0214921_1001120317F014017AGGMDKLIEYLDDTHRKKIADEIRYLELPPEWRPHEVIRYIVRIIEKNNG
Ga0214921_1001120326F077310AGGMSIDANSVIIVIVASILSGMGTAMINGIKESRKEKIRQSEREQDMLKIDLKDLEIKLYKLEKDLAEWRDKYYDTLQKLIDVKAELEDTLIKLSHIGLHE
Ga0214921_1001120329F000473AGGAMEFINKDKDHFKYGVNEWTGEPNKPVFYTPEMAKRIREIKKPDMSLQMDIARYPEFLAIRLYEDNFLKYEGIKKEMVIDYVGKVKKLIESYGVRCELEGVPSARILRSN
Ga0214921_100112039F006846GGAGMENTQKRKTIIMIYDLVEKYLMRPKRLREAIQAVVRDNDELLRLIKEAENEESTNLTWSEGDTWYGWTYNTKLKRYFFDDIGNESLMGLWEDQWAREKESEDKNMFENQIDFE
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