NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10015409

Scaffold Ga0214921_10015409


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10015409 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8716
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012108Metagenome / Metatranscriptome283Y
F037567Metagenome / Metatranscriptome167N
F053106Metagenome / Metatranscriptome141Y
F064189Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001540910F037567GAGGMEWISFFGPRRPINGQKVYYFGEYIGVWQGRYEIHKDDPVSEHILICEESPGIVDRMDAPWWMPYEGQPKPKRPTTDYPKDYPHG
Ga0214921_1001540911F064189AGGAMAKNFKDLISADPKTMTREQAMIYIINFFSSRMMTTSVKHVSKAKELIGLHEIGASELVDKYVELVYENS
Ga0214921_1001540915F012108AGGAGMINLQLTVREAMYLASNWAYNNDAELYHKIVNSVEIALGVNQNRTVTITGGMTLDNRIYCIKAIRTHTGWGLKEAKDWSDILVGGWKYDTFVPAAANVRNSITLKTPEAAENLLRDLVDKGCEGFLS
Ga0214921_1001540922F053106GGAGMAKYYVKSGTLEVILSQPNALEAAICGLLLTNKFDTIDEHFYVDEQGYRDYISATPKTNVIATKSIVRAAGWELSRADDE
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