NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214921_10023509

Scaffold Ga0214921_10023509


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10023509 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6409
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005558Metagenome396Y
F013279Metagenome / Metatranscriptome272Y
F014590Metagenome261Y
F026864Metagenome196Y
F068766Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1002350910F026864AGGAGGMSEQEKMAQFVFTVVIAPANKQYDVELWDFAGDEPKQLATGGGSNWRTALGEALSKIELPTDKQEKTINDLVKEGVEDEGV
Ga0214921_1002350911F005558AGGAGGMTTDQDSMSWSELAQLTHATQVERFNWCMCEDNEGQENPYNDCPKEAE
Ga0214921_100235092F013279AGGAGMMYDYRCPDCNTELTIERSIHEEPREPTCFDCHVSMIRKWDSPSVTFKGKGFYTTDK
Ga0214921_100235093F014590GGAGGVRTRHLQLVTHEHSVTIKTKSDVSSPCGPVRAGLTTSQITRDQALTELLNSLESVVASLNSKSFTALDTLDTAIQGVRVALYSTVTEEAGTDIL
Ga0214921_100235096F068766AGGAGGMTEDNVIGFHSKNKLVNFYEIATEEGNAVWGGEDPHSAVQWLRKSPLNSRLLVSCWEAGEEDARLIIEPIDITKIVYAVLAGAQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.