Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10023509 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6409 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (94.74%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005558 | Metagenome | 396 | Y |
F013279 | Metagenome / Metatranscriptome | 272 | Y |
F014590 | Metagenome | 261 | Y |
F026864 | Metagenome | 196 | Y |
F068766 | Metagenome | 124 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214921_1002350910 | F026864 | AGGAGG | MSEQEKMAQFVFTVVIAPANKQYDVELWDFAGDEPKQLATGGGSNWRTALGEALSKIELPTDKQEKTINDLVKEGVEDEGV |
Ga0214921_1002350911 | F005558 | AGGAGG | MTTDQDSMSWSELAQLTHATQVERFNWCMCEDNEGQENPYNDCPKEAE |
Ga0214921_100235092 | F013279 | AGGAG | MMYDYRCPDCNTELTIERSIHEEPREPTCFDCHVSMIRKWDSPSVTFKGKGFYTTDK |
Ga0214921_100235093 | F014590 | GGAGG | VRTRHLQLVTHEHSVTIKTKSDVSSPCGPVRAGLTTSQITRDQALTELLNSLESVVASLNSKSFTALDTLDTAIQGVRVALYSTVTEEAGTDIL |
Ga0214921_100235096 | F068766 | AGGAGG | MTEDNVIGFHSKNKLVNFYEIATEEGNAVWGGEDPHSAVQWLRKSPLNSRLLVSCWEAGEEDARLIIEPIDITKIVYAVLAGAQ |
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