NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10028232

Scaffold Ga0214921_10028232


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10028232 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5612
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000980Metagenome / Metatranscriptome814Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F001460Metagenome / Metatranscriptome690Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1002823210F000980N/AMTKYQKYTWVCTSDCDALIEYTFKDGYGWPAGVMELTCRCGNNCTLLSVEDATIPYTDTLLTKEETMETTESSAVTIPDTYNPNLLVTYKVIRGYSDAEYATDKVASLEWDLHNGRQSQKTVGVLQGKIDTVKDIITEAYVDSDDQDTLRSIAEALGIELVREVLFTATLEVSGTYTYNILDSDYELDLDSEVTDALYADSNNGNITIDDTEVCHVREA
Ga0214921_100282322F001460AGGAMLGYTESDLNKMINAVHDAKLFYLRYPSDLMDKTELRNDLEMAVSFMQGLWAEGYFD
Ga0214921_100282326F001125GGCGGMGDRANFGFKDSKGNTLYLYGHWAGHRMLENLSNAVHAAEPRWDDEGYATRICISQLVNDEWASETGWGLYINQIGDNEHKVPVIDWSAKTFTLLEEDLTTEVFSTSLEAFVKKYSSQPSMV
Ga0214921_100282328F001043AGGAGMSDYKDGFEDGYKFAREEMMEKLAEIDITDIDSWILDRLCEMIEGGAL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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