Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10033004 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5006 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (90.00%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000447 | Metagenome / Metatranscriptome | 1128 | Y |
F001562 | Metagenome / Metatranscriptome | 670 | Y |
F002245 | Metagenome / Metatranscriptome | 578 | Y |
F004051 | Metagenome / Metatranscriptome | 455 | Y |
F006744 | Metagenome / Metatranscriptome | 365 | Y |
F017995 | Metagenome / Metatranscriptome | 237 | Y |
F024549 | Metagenome / Metatranscriptome | 205 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214921_1003300410 | F017995 | GGA | MAKMKEYIEIIAANCDNCGGAGFVFFGDEKNYDVEPCECIADLSDELTLDWVNN |
Ga0214921_1003300411 | F024549 | N/A | MYKLFTYYDGNLEYTHQFADALQAFEAFAKCYDVGFAKELATYNLEMPTGKMYTKNFNRIGLVSAK |
Ga0214921_1003300417 | F002245 | AGG | MSNLIKVPHTVVFEAIIDLDKVPANLLPALIALDQNTITQMCKEATINALSLSDVLNIANENNTWAEVIMKEGN |
Ga0214921_1003300419 | F004051 | AGGA | MTIDNKTYQVGDLFTTLKSKETGVIKEIIPNSSGSVRVRLETDNGERWTTVLADKLG |
Ga0214921_100330046 | F001562 | GGGGG | MTKSQFEKDLEIKESFIDFLNDIYPTVKIGYSTFTPAEILECCDPIAFAIGLVEHQDYLAELEN |
Ga0214921_100330048 | F000447 | AGG | MGYIEIFRMDSEGAGWVDLSEATPDELFNIELGLLDEGAFE |
Ga0214921_100330049 | F006744 | AGGAG | MNLDEFKAHVLATRQASKAEALSVLSATITTQPNERENLNG |
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