NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10041827

Scaffold Ga0214921_10041827


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10041827 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4215
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012344Metagenome / Metatranscriptome281Y
F012775Metagenome277Y
F018175Metagenome236Y
F040107Metagenome162N
F060919Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1004182710F018175GGAGGMDKSAKNQKEYYHNKIREFEKRTGMSMNVKGVSDMYYDYDTAETFFNYPAALDLLNQNNIYIYHDLLVEEDILSNGTNWLKYGYTKNDDKVYKYYYEIKKWGNETKELETDYNKSKVWKAAMLMTKHIGSSFDDFLKTNNIELKRDINWAIKMLEYGKMVSREGNPNLTLFPKKYDQVESTITTTDLFAEDWVIVPTKLFKDVLDDLNAGKTIRRKSWHCDWGVGKYARYGKIIYLDLIADDWEVVDVVAEVNKQQEQILKDRNEH
Ga0214921_1004182711F012775GGGGGVKLFSEITRPLIVLNLKIRSKRWSEAYYIYRDEEKLMDSMGNLFYYSWEDFIRLHGHILDNSGPVWEIYEEVEFDNL
Ga0214921_100418276F040107AGGMTGIEALSLLKDGKTLRRESWEPHEKCKALDFFGQWIVHLIKEQDDENLDKELESIFQNSFSLTKTTFDDFFGLFDTIDGGDFLHDDWEIVDSRT
Ga0214921_100418277F012344GGAGMKFSEVLDSLMEGKPITRVAWEQKYMYYDKDDNVFVYHYSEDEERELMCWGLDLEPCDLLADDWDIDYWDTDHIVDDNKKVDEE
Ga0214921_100418278F060919GGAMTGREALDKLQAGFTLRRESWEPDEKCKAFFSDDLWSIRVECKSISPAPEHVPDDPKFADYMSIFDAIDAGEFLMDDWEIVE
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