NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10041963

Scaffold Ga0214921_10041963


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10041963 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4205
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005175Metagenome / Metatranscriptome409Y
F057208Metagenome136N
F105047Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1004196311F057208N/AMAGFKSKKIFCMDMSRLSGKPCQAKGFPTNKFNKQGIQIYKCRFHGGQNTNFYGFRDRANRGGFNKPGYTDEKKIKSLASLKQFRDKPIEYVRQYYESQAKPRVDSLGRYSSKYSSRAA
Ga0214921_100419634F105047AGGAGMKTINFDKVIIEWMDINSCDDAWNTEDHLKDLMPASCTTIGYLYEDTPHFVKTFATFSFNTDDTIDFGDCIVIPKGCVVSIKKLEN
Ga0214921_100419637F005175AGGMIDKELHVEDVIEIFNEKILVLKKEIDRLNEEIQVLQIELMQERAKNND
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