NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10048887

Scaffold Ga0214921_10048887


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10048887 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3755
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002245Metagenome / Metatranscriptome578Y
F004051Metagenome / Metatranscriptome455Y
F017995Metagenome / Metatranscriptome237Y
F024549Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1004888712F002245AGGMSNLIKVPHTVVFEAIIDLDKIPANLLPALIALDENSIQQMCKEATINALSLSDVLKIANENNTWAEVIMKEGN
Ga0214921_1004888714F004051AGGAMTIDNKVYQVGDLFTTLKSKETGVIKEIISNSSGSVRVRLETDNGERWTTVLQDNLA
Ga0214921_100488875F017995GGAMSKMKQYIEIIAANCDNCGGAGFVFFGDERNYDVEPCECIADLSDELTLDWVNN
Ga0214921_100488876F024549N/AMYRLDTYYDGKLEYTFQFADALQAFEAFSKCYDVGFANELATYNLSMPNGKMYTKNFNRIGLVSAK
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