NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214921_10051524

Scaffold Ga0214921_10051524


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10051524 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3612
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F001043Metagenome / Metatranscriptome794Y
F019324Metagenome / Metatranscriptome230Y
F023344Metagenome / Metatranscriptome210Y
F036238Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100515241F001043N/ARWAREEITEKLREIDVMDIDSWLLDKLADMIEGGHL
Ga0214921_100515243F036238AGGCGGMGDRANFAFKQTDTNTIVLYGHWAGYQMLNNLAMAVDKARGRWADESYATRICISQLVGDQWNSETGWGIQVNSISDNEHKIPVINWGTQTFSLHEQVAHSFDSQIRGVNDEPIFTMSLDNFVKKYSAALV
Ga0214921_100515245F023344AGGAMEPFTDTVGEHILGAIQVDIEQHLFEQWNDRNLDEGSEYAEWQFMSFAPDNLKQSYNEYYGYKEGDDFYLC
Ga0214921_100515246F019324AGGAGMLGYSSKDLDEMVYAIQSVITTVDSDDDPFLHGNLWKAQEFLQGLWAEGYFDHD
Ga0214921_100515248F000263AGGMNNEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQELADAIEREEESEEAMDSMVRTECEGALDTLVALYKLTYDLSFAIGVREENRKDGHL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.