NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10068340

Scaffold Ga0214921_10068340


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10068340 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2922
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F001043Metagenome / Metatranscriptome794Y
F020171Metagenome / Metatranscriptome225Y
F038669Metagenome / Metatranscriptome165Y
F071228Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100683401F071228N/ALVTYKKIAGTYAAPEEPEYITDKVVQIEWDLDQARRVVENFNSLKNTVRELEELLVELYNPNYTKEEALQQIAELFGFELSKTVTVTGTINFEATVQVPLNEIDNFDAHYKLGDELSLTSYGSDVEVNDWSIEDTDVDWN
Ga0214921_100683403F001043AGGAMSDYKDGFQEGYKFAREEMIDKLREIDIADIDSWLLDRLSDMIENNKI
Ga0214921_100683405F000450AGGCGGMGDRANYVFVDGAGDTICLYGHWAGYNMLGKLADAVIAARPRWTDESYATRIAISQLIGDQWNMETGWGLQVNSIGDNEHKIAVINWKDQTFSLHEQDDHRNLENKVLGMNNKAIFTMDLSAFCEKYALERLLV
Ga0214921_100683406F020171GAGGMAGQFIDTVAEHITGAMIQEISEDLFENWSNACLDEGEDYAENKFMAYASPELKKQYNDFYGYTEGDDYYLC
Ga0214921_100683409F038669GGAMININGKLEPRLQKLVDLGESGTDIMHGELKNLMLDAQQGLLNVSELQDYPTYRYISGYLDALTECYTLTYNLAFALNERIVSRG
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