NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10075718

Scaffold Ga0214921_10075718


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10075718 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2704
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006846Metagenome / Metatranscriptome363Y
F020166Metagenome / Metatranscriptome225Y
F026561Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100757186F006846AGGAMIHDLVERYLMRPKRLREAIQDVVRENDELLRMIKESENEEPTNLTWSEGDTWYGWTYNSNAKRYYFDDIGNISLMGLWEDQWAREKERGE
Ga0214921_100757187F020166N/AMKEPKIMKMDWRSLGYWPVYKDGKLTWEKDTKNDS
Ga0214921_100757188F026561N/AMSNFQKDDGTGMTPPPAAGSASGAVTSRDATRKYPKQGIKPRMKIDINSHGIRRETSLDPKPKKTRPKKV
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Institute for Fundamental Biomedical Research
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