NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255772_10027152

Scaffold Ga0255772_10027152


Overview

Basic Information
Taxon OID3300023176 Open in IMG/M
Scaffold IDGa0255772_10027152 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4357
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000744Metagenome / Metatranscriptome909Y
F005629Metagenome / Metatranscriptome394Y

Sequences

Protein IDFamilyRBSSequence
Ga0255772_100271521F005629N/AMKEIKETSYYIRRSYTDFVGRVVKVDHVGPYMESQEFAVAMQRGHDMRRQRPDVIQITKWEWVDGVTAIAD
Ga0255772_1002715213F000744N/AVKGKFMTDANINLNVHEIGIILSALQLLQHRDENLIAREYGSTEALYDKLNNIWQTLDRTETGLRNDVIPSY

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