NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255772_10233519

Scaffold Ga0255772_10233519


Overview

Basic Information
Taxon OID3300023176 Open in IMG/M
Scaffold IDGa0255772_10233519 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1018
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004086Metagenome / Metatranscriptome454Y
F011113Metagenome / Metatranscriptome295Y

Sequences

Protein IDFamilyRBSSequence
Ga0255772_102335191F004086N/AGTMDLEVAESVNLDGTINYTNINSDLAQDTKEKNIGFFYSKAPAEMFDTGLNFTAEYRTDKSGVANNDGVEMAVKMVKKFAGSCKFLWMKNPKCFDKDGNMKSNLFGTSIDNATKHGLVYDLKTDKFIPIKK
Ga0255772_102335194F011113GGAMGTEKLKFKLELYATMWDKPPHVEILIDDKLYFAGN

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