NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255759_10000296

Scaffold Ga0255759_10000296


Overview

Basic Information
Taxon OID3300023178 Open in IMG/M
Scaffold IDGa0255759_10000296 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44902
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (13.21%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009699Metagenome / Metatranscriptome314Y
F016269Metagenome / Metatranscriptome248Y
F032639Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0255759_1000029644F016269N/AMNVNDFIFICEEYNIDPVIASEDEGVRSILKTPTSSVNQQLMLSGYLHKNF
Ga0255759_1000029647F032639N/AMSLWDDSKNRTMLDKNKKLINEDGLYVGSELMWCVDDVLRILDEMHMTASKEDVERILIASFQDNHTLMQQINEAIGDTITYMIEEGQLKTEEL
Ga0255759_1000029648F009699N/AMTDKEAQAFMQKVDATAPFWVELTAEDRPTIKIQGRDVPRCLYNLMITRRDVNLYLHGLKPHRGWKIGDVKAYFGLKGGKQKVADAINAMHDELMGRFKEQNDARQEQETD
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