NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10000060

Scaffold Ga0214923_10000060


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10000060 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)146337
Total Scaffold Genes206 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (11.65%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075743Metagenome118N
F080941Metagenome / Metatranscriptome114Y
F098949Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_10000060196F075743N/AMKQEKQALSSLTLIKDPLIEPYFIGKDASSYTVYETLKPGTNKGGRGRQTRAQEGLKAHTHHSSFGSAISSIAKLKIDNRPVYESLSEYVAEWKRVKEEITQIIHPEL
Ga0214923_1000006023F080941N/AMAVDFEMFTEEGNEACTQAYQNIYDVIFGSKFIPEAELKAVVKAEIKQVSLTHGEVYDTEPEWHFVDRINMALETRGYSYRVTRNDLY
Ga0214923_1000006038F098949N/AMELLNHQIENQVIEHTYVIQHPTEGVLYYKEWVSADNGNFIDCTLRSKGGYEIDDPTIMEQVQEFVDNLGY
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