NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10003088

Scaffold Ga0214923_10003088


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10003088 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21269
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (72.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F059898Metagenome / Metatranscriptome133Y
F104075Metagenome101Y
F104766Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000308827F104075GAGGMAKLRKQVSLDFLDYTKVTINDLLASRIPQSAKQRLCFVMEKLLHDTKAYNGFKYLYWSKYGCLDWDEAKQKGVYKEVPKEFMYGPDDSGELDFVSDIQGQYSRRYI
Ga0214923_1000308848F000325AGGAGMKVANGNDKLGKGCIVVSRPVGDTCPSDCEFLDNGCYAEQTEKMYPGVRPAGMQNLITEKNRIRSMILDAVSKNKSIRWHERGDWFLNGELDTNYVENVTWACESILAEGKTLPDMWFYTHIYDSRLVAFSKYMAVYASIHNAEDKKQAEAAGFKLFAWCDSDQKIAKKRPKRKNLADAWRASLPKLVIIDDTKYITCPEIRRGRGVVTCTPTNGSVSCDLCVRGLANVLFPSH
Ga0214923_1000308849F059898AGGAMNGDRNKAMIHILNFFRSKMAAVNKHNVSQVKELISTHEISVSELVDKYIELVISNS
Ga0214923_1000308850F104766GGAGGMEWISFFDRQPEDEQHIWYYGEHIGVWRGEYRYSPDDVISPHIMVCHESPGLVDRMDAPWWMPDDGVMSRPNKPDQPYPKDYPS
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