NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10004510

Scaffold Ga0214923_10004510


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10004510 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16773
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (71.43%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F008071Metagenome339Y
F039993Metagenome / Metatranscriptome162Y
F039994Metagenome162N
F057984Metagenome / Metatranscriptome135N
F091592Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000451017F039994AGAAGGMSAPTIEEMGNAASEIVWRVMGNGSSKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPCPDEAGETSLDHLERAVVRALFAWMQLKKGLPKI
Ga0214923_1000451020F039993N/AMKLALAWICYWIGDFISITIMRYGYGYSLYNKLMLLSSNLDDKGVIWK
Ga0214923_1000451023F091592GGAMISAQLTRGDENDRIKQLAGEVAIRAMQDIRLLQRRGVLDGLRLTNQQIGKLSDCNCYRDIEEVKSLIRDFKNGNVLFWCRLAGVKIGQKTLNRLIRKKADYVN
Ga0214923_1000451025F057984AGGAMGGLGQIKILAERKVKMVEIDIEVDEDTKAKICHAALCEITSDADALFSYGFTQALKRLVQTKGKKCTQKSSNKKSSRR
Ga0214923_100045103F000635GAGGMTLSEIAQFAGEKVGKTDSDTLTFLQKAASLAYRRVWNFAPWRESVTSSTYSVGTNRTITLGSNVETPLSVSFDKSEVDPIDLATIISQDADLLEDTRTGDPVLYHFTGRNTSGIAQLDLYPRLATAGTESLRVVEKLKCLTRTNIVVDFPPSTEALNDELRLPHVHQVILALTHADALERERQYAKAQAVVQSANADLAAMANYELSQVGGVKQITPVSLGDLMTEEITAA
Ga0214923_100045105F008071GAGGMTPMEYIELSGVPESRWPNFKEWFKWHEKNNLVGVVKDGEEVVGVAIARALDSTQSIEHYKHDYNAPDAFVDLTVTSIDGKPNARSLLAMKRLLSILWDELGPRRSLIFNRNGIRKQYDYMKFMRKAMA
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