NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10005149

Scaffold Ga0214923_10005149


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10005149 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15341
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (70.83%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002009Metagenome / Metatranscriptome604Y
F002826Metagenome / Metatranscriptome527Y
F003304Metagenome494N
F039993Metagenome / Metatranscriptome162Y
F065527Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000514910F003304GGAMKKALVTQCFGDDWNKIIELTRPRMEDYCKRHGCDFILIDKPLTHPIQYSKSAIGNIMATKGYDQVTFVDADVLIAADCPKLSDDAGVFCAFDEGAYLDRKPDMAKLAGTFGGMIEPKFYVNTGVFVIHSKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTDLDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLTKLAEQIKSDDAKLAELGR
Ga0214923_1000514911F039993N/AMKLALSWLCYQMGDLISVTLMRWGYAYSIYNKLMIWSSALDEHGKIWENAK
Ga0214923_1000514913F002009AGGAGGMTAPTIQEMGNAAQEIVWRVMGKGSDKSGYGDWLEKDKPTHDYHIARAVRHLATAQMQLHKSTPCPDNNGETSVDHLERALVRTLFVLAQIKKEVPRL
Ga0214923_1000514919F065527GAGMKTITTTVLMAMLMASVMAGEDEDEVSIGDFAGGVLGKSAIITGRNTAVTSDGKFIYSNGRGFATSGGYYGANGKQVFGNGKLVVKSGSFFYGSSSSWKNGNSYFDGEKGSWITSKPEID
Ga0214923_100051492F002826N/AMQVEAKDRLKWAREILLSAREKLAVERDRATHGRVVDIIQIITMVDAAALVCKEITEGE
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Institute for Fundamental Biomedical Research
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